Protein ZmBAF60_10 | |
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Information | |
Coreg Name: | ZmBAF60_10 |
Species: | Maize |
Coreg Family: | SWI/SNF-BAF60 |
Gene Name(Synonym): | |
Uniprot ID: | B6T2N1 |
Subgenome: | 1 |
ZmBAF60_10 is a protein in the SWI/SNF-BAF60 family.
Overview of domains present in v5 transcripts | |
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PF02201 | |
Zm00001eb264760_T001 |
Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
---|---|---|---|---|---|
Zm00001d035321 | DAPseq | sequence | fimo | position | |
Zm00001d035321 | DAPseq | sequence | fimo | position | |
Zm00001d035321 | ChIPseq | sequence | fimo | position | |
Zm00001d035321 | PChIPseq | sequence | fimo | position |
MSVAIRSGELLACPVALRRAPLAVSVVSVRMRARGAVAVRAEATAEGVGKEGKKAAGKKKPASGITKPKPISTELREFVG
GAAELPRTEAIKLVWAHIKGNNLQDPNNKKIIICDEKLKKIFGGRDRVGFLEISGLLNPHFQK
MSVAIRSGELLACPVALRRAPLAVSVVSVRMRARGAVAVRAEATAEGVGKEGKKAAGKKKPASGITKPKPISTELREFVG
GAAELPRTEAIKLVWAHIKGNNLQDPNNKKIIICDEKLKKIFGGRDRVGFLEISGLLNPHFQK
MSVAIRSGELLACPVALRRAPLAVSVVSVRMRARGAVAVRAEATAEGVGKEGKKAAGKKKPASGITKPKPISTELREFVG
GAAELPRTEAIKLVWAHIKGNNLQDPNNKKIIICDEKLKKIFGGRDRVGFLEISGLLNPHFQK
MSVAIRSGELLACPVALRRAPLAVSVVSVRMRARGAVAVRAEATAEGVGKEGKKAAGKKKPASGITKPKPISTELREFVG
GAAELPRTEAIKLVWAHIKGNNLQDPNNKKIIICDEKLKKIFGGRDRVGFLEISGLLNPHFQK
MSVAIRSGELLACPVALRRAPLAVSVVSVRMRARGAVAVRAEATAEGVGKEGKKAAGKKKPASGITKPKPISTELREFVG
GAAELPRTEAIKLVWAHIKGNNLQDPNNKKIIICDEKLKKIFGGRDRVGFLEISGLLNPHFQK
Secondary Structure Color Code | |
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BEND | region with high backbone curvature without specific hydrogen bonding |
HELX_LH_PP_P | left-handed polyproline helix |
HELX_RH_3T_P | right-handed 3-10 helix |
HELX_RH_AL_P | right-handed alpha helix |
HELX_RH_PI_P | right-handed pi helix |
STRN | beta strand |
TURN_TY1_P | type I turn |
UNDETERMINED | no data available |
Domains Present | |
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PF02201 |
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Hover here to show all domains |
ACACTACCTACCGTTGTCTCCCACG...
ACACTACCTACCGTTGTCTCCCACGTCGAAAGGCGGATAAGGTTTTCAAACGCACGCGATTGCGGAGATCTCGGCCGCCCGATCCGCCACTCCTCCATCCGACGGCAGGTACGTCCCCGGCCGGCCTACTACCCGGCGACCTCGGTCGCCCATGGCCACCGCGAAACCTTATCCCCAGAACCACACGGATAAACCCTAGCTGCGCGAGCCCCCCGGCGATGTCGGTGGCCATCCGCTCCGGCGAGCTCCTTGCGTGCCCCGTCGCACTCCGGCGGGCGCCCTTGGCTGTGTCTGTGGTGTCGGTGCGGATGAGGGCTAGGGGCGCCGTGGCTGTGCGGGCGGAGGCAACGGCCGAGGGGGTAGGGAAAGAGGGGAAGAAGGCGGCGGGGAAGAAGAAGCCGGCGAGCGGGATCACCAAGCCGAAGCCCATCTCTACAGAGCTGCGGGAGTTCGTCGGCGGCGCGGCGGAGCTGCCCCGGACTGAGGCCATCAAGCTGGTATGGGCGCACATCAAGGGCAACAACCTCCAGGATCCAAACAACAAGAAGATAATAATCTGCGATGAGAAACTGAAGAAGATATTCGGAGGGCGTGACCGCGTTGGGTTTCTCGAAATTTCCGGGCTGCTGAACCCCCACTTCCAGAAATGATAGGGCCTTTTTTGTTTTGTTTTGTTTTGTTTTGTAGATCACTCTCCTCTGTTGTGCTAGCTGTTGCTGATGTACGACGAGCACATTTAGCTGCTAAACCTGGGCTAAAAGTGGTCTCTGTCTCTTGACGGCGGTTTAAGGAAGGCAAATGCGTTCCCTGAAGATGCATGTGATTGTGATATTCGCCGTTAATGGTGTACTAGCAGTTGCTTAATCATTCATGCTTATATCCTATCCACACACCTACCGTCGTAGACCTGAGTGGTGGATCATCGCATTCTTCGACTCATTATGTGTGGATTTTTATTATCCTTGTCTTTGGGTTATTAATGGTTGCG
MSVAIRSGELLACPVALRRAPLAVSVVSVRMRARGAVAVRAEATAEGVGKEGKKAAGKKKPASGITKPKPISTELREFVG
GAAELPRTEAIKLVWAHIKGNNLQDPNNKKIIICDEKLKKIFGGRDRVGFLEISGLLNPHFQK
GCTGGCCAACTAAGGCCATAATCAA...
GCTGGCCAACTAAGGCCATAATCAAAATTGTCCCTATTCATTTATATCATATCTCATAAAATTGACAGTGCATATATTCAAATTCGAATTTAATTAAAATAAAATTATTATCAGATATAGCCCGTATTCTATTTCCACACTACCTACCGTTGTCTCCCACGTCGAAAGGCGGATAAGGTTTTCAAACGCACGCGATTGCGGAGATCTCGGCCGCCCGATCCGCCACTCCTCCATCCGACGGCAGGTACGTCCCCGGCCGGCCTACTACCCGGCGACCTCGGTCGCCCATGGCCACCGCGAAACCTTATCCCCAGAACCACACGGATAAACCCTAGCTGCGCGAGCCCCCCGGCGATGTCGGTGGCCATCCGCTCCGGCGAGCTCCTTGCGTGCCCCGTCGCACTCCGGCGGGCGCCCTTGGCTGTGTCTGTGGTGTCGGTGCGGATGAGGGCTAGGGGCGCCGTGGCTGTGCGGGCGGAGGCAACGGCCGAGGGGGTAGGGAAAGAGGGGAAGAAGGCGGCGGGGAAGAAGAAGCCGGCGAGCGGGATCACCAAGCCGAAGCCCATCTCTACAGAGCTGCGGGAGTTCGTCGGCGGCGCGGCGGAGCTGCCCCGGACTGAGGCCATCAAGCTGGTATGGGCGCACATCAAGGGCAACAACCTCCAGGATCCAAACAACAAGAAGATAATAATCTGCGATGAGAAACTGAAGAAGATATTCGGAGGGCGTGACCGCGTTGGGTTTCTCGAAATTTCCGGGCTGCTGAACCCCCACTTCCAGAAATGATAGGGCCTTTTTTGTTTTGTTTTGTTTTGTTTTGTAGATCACTCTCCTCTGTTGTGCTAGCTGTTGCTGATGTACGACGAGCACATTTAGCTGCTAAACCTGGGCTAAAAGTGGTCTCTGTCTCTTGACGGCGGTTTAAGGAAGGCAAATGCGTTCCCTGAAGATGCATGTGATTGTGATATTCGCCGTTAATGGTGTACTAGCAGTTGCTTAATCATTCATGCTTATATCCTATCCACACACCTACCGTCGTAGACCTGAGTGGTGGATCATCGCATTCTTCGACTCATTATGTGTGGATTTTTATTATCCTTGTCTTTGGGTTATTAATGGTTGCG
MSVAIRSGELLACPVALRRAPLAVSVVSVRMRARGAVAVRAEATAEGVGKEGKKAAGKKKPASGITKPKPISTELREFVG
GAAELPRTEAIKLVWAHIKGNNLQDPNNKKIIICDEKLKKIFGGRDRVGFLEISGLLNPHFQK
ACACTACCTACCGTTGTCTCCCACG...
ACACTACCTACCGTTGTCTCCCACGTCGAAAGGCGGATAAGGTTTTCAAACGCACGCGATTGCGGAGATCTCGGCCGCCCGATCCGCCACTCCTCCATCCGACGGCAGGTACGTCCCCGGCCGGCCTACTACCCGGCGACCTCGGTCGCCCATGGCCACCGCGAAACCTTATCCCCAGAACCACACGGATAAACCCTAGCTGCGCGAGCCCCCCGGCGATGTCGGTGGCCATCCGCTCCGGCGAGCTCCTTGCGTGCCCCGTCGCACTCCGGCGGGCGCCCTTGGCTGTGTCTGTGGTGTCGGTGCGGATGAGGGCTAGGGGCGCCGTGGCTGTGCGGGCGGAGGCAACGGCCGAGGGGGTAGGGAAAGAGGGGAAGAAGGCGGCGGGGAAGAAGAAGCCGGCGAGCGGGATCACCAAGCCGAAGCCCATCTCTACAGAGCTGCGGGAGTTCGTCGGCGGCGCGGCGGAGCTGCCCCGGACTGAGGCCATCAAGCTGGTATGGGCGCACATCAAGGGCAACAACCTCCAGGATCCAAACAACAAGAAGATAATAATCTGCGATGAGAAACTGAAGAAGATATTCGGAGGGCGTGACCGCGTTGGGTTTCTCGAAATTTCCGGGCTGCTGAACCCCCACTTCCAGAAATGATAGGGCCTTTTTTGTTTTGTTTTGTTTTGTTTTGTAGATCACTCTCCTCTGTTGTGCTAGCTGTTGCTGATGTACGACGAGCACATTTAGCTGCTAAACCTGGGCTAAAAGTGGTCTCTGTCTCTTGACGGCGGTTTAAGGAAGGCAAATGCGTTCCCTGAAGATGCATGTGATTGTGATATTCGCCGTTAATGGTGTACTAGCAGTTGCTTAATCATTCATGCTTATATCCTAT
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